YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125981257, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.70
Transmembrane Helix	10	34	0.81
Non-Cytoplasmic	35	41	0.63
Transmembrane Helix	42	61	0.61
Cytoplasmic	62	85	0.89
Transmembrane Helix	86	108	0.91
Non-Cytoplasmic	109	124	0.88
Transmembrane Helix	125	146	0.89
Cytoplasmic	147	155	0.69
Transmembrane Helix	156	176	0.86
Non-Cytoplasmic	177	184	0.67
Transmembrane Helix	185	208	0.87
Cytoplasmic	209	353	0.99
Transmembrane Helix	354	377	0.85
Non-Cytoplasmic	378	397	0.90
Transmembrane Helix	398	420	0.86
Cytoplasmic	421	430	0.87
Transmembrane Helix	431	450	0.93
Non-Cytoplasmic	451	456	0.66
Transmembrane Helix	457	476	0.85
Cytoplasmic	477	493	0.78
Transmembrane Helix	494	512	0.87
Non-Cytoplasmic	513	517	0.72
Transmembrane Helix	518	538	0.93
Cytoplasmic	539	556	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARNVLESSL LGAGFSIIFQ ILCRILTFGI NAYIVRNVGR EVLGIMNVRL LLLESTLLFL  60
   61 SREAINRAAL SANSQQRDRC SWAQLINQMW LTVPICVVLC GPCLYIWLNW LSTVDAVYSS 120
  121 QYEFACYAVA LSCVLELFAE STVFVAQVFC FVKLKILLNT LHIFVRSAIF LWIVIGDRSA 180
  181 AITAFGIAQM ASAVTIVLGQ YGFFYFYIGR FNDYKLQQAR KKQPTPTSWE LTLFEHMDDF 240
  241 PFTRLTEFLP GVMFDPIGKF FNRELQTLTL SFVKQGVLKQ ILTEGEKYVM SVSPVLSFGE 300
  301 QATYDVVNNL GSMAARFIFR PIEDSSYFYF TQTISRDTRL AKQPSDQVRQ ASSVLNNLLL 360
  361 GVSSIGMLAF TFGQSYSYPV LLLYGGPDFV AGGLPQSLLQ WHCLAIYLLS VNGISEGYMF 420
  421 ATNTSRDIDK YNYLMAIFSV SFLVLSYILT GIFGPVGFIF ANCINMLGRI LYSTYYIRQQ 480
  481 YQPLSLNPLL GLKPAKLFAG TLILSGLICY WYQSSALFTH LGIGLIAGLV CLLAWALSHR 540
  541 DLVRLAWRYG RRIKID