YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54642892, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPQRQCIVV NMRSAIALIV IFVLNGIKNS ETASGGNQMD LSDAKVFMPA LGNMVSKTSS  60
   61 SSSASIDNIT TYTSSSSNNN MLCPFDRETP CDRLQFPCIR CSYNYGCYYG REVNVTCEAI 120
  121 TNVQCQGERT FQRQMSCRYC YQTELWQQSC LQRANCNKFY RTNCTVHHDV LCLGNRSFTR 180
  181 NLKCNWTQGY RWSTALLISL TLGGFGADRF YLGHWQEGIG KLFSLDFGVW TIIDVLLISM 240
  241 HYLGPADGSL YI

Type	Start	End	Confidence
Cytoplasmic	1	8	0.68
Transmembrane Helix	9	27	0.47
Non-Cytoplasmic	28	189	0.65
Transmembrane Helix	190	212	0.75
Cytoplasmic	213	221	0.54
Transmembrane Helix	222	244	0.77
Non-Cytoplasmic	245	252	0.65