YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54642726, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADWLDRCL GGYFQLLALR CSYSKRRAGR LLSNLYLMLV ILDLVGQMRS YAHGEEPMVD  60
   61 RMLFFPKAIQ AVNVFYKLVH ALIALFALVG CQRERRLLQQ LPPTHATPGI YRQVALEFLM 120
  121 VVYALWISFF DSLNAGQILE NLRYVFSSQA VRARYLQMLL LVGRLQAQLE QLQRQLIDCS 180
  181 LDDYQQLRSS YAHLARLCRS LSQLYGPSLL LLNVLVLGDC LIVCNVYFMV EHLEAVPATW 240
  241 LVLWQAVYIV VPTLVKIWTV CAACDRFVMG SKILRQQLSD RRGRTSEERS QIEEFVLQIM 300
  301 QDTLQFNVCG IYHLNLQTLA SKMLPRHAMR EEMSLQFGKI NASAEWNMAK NASPADNDDP 360
  361 IDGQPGIE

Type	Start	End	Confidence
Cytoplasmic	1	31	0.93
Transmembrane Helix	32	51	0.86
Non-Cytoplasmic	52	71	0.83
Transmembrane Helix	72	91	0.87
Cytoplasmic	92	208	0.65
Transmembrane Helix	209	229	0.83
Non-Cytoplasmic	230	240	0.73
Transmembrane Helix	241	262	0.73
Cytoplasmic	263	368	0.81