YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54642681, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TATASSSGSG SFGSATHKDK VGLPPVYLTL NDVSHRTSLV LPPNRSWDEH RTADVWLSSL  60
   61 HSVIFIITCA LAVFILFRNV LTWHLQSFWG ASGDFWQSQW DKFIDSFGDE PMVLWVFGTT 120
  121 IFTMIVYWTV GTIYTFMDLT NRPACLRKYK IQPGTNEPVE ARRLMKVIWC VIFNQIFVGI 180
  181 PLAYGSYRLM EIRGLSDIRD LPTFHWVCFE LTVCILMEEL GFYYSHRLLH HKFIYKYIHK 240
  241 QHHEWTAPIS VTAIYCHPVE HIFSNLLPPF LGVFLMGSHV ATAWLWFALA ILSTLNAHSG 300
  301 YHLPFFPSPE AHDFHHLKFS NCFGVLGVLD RLHGTDSLFR ATKSYARHIM MLSFKPPRDA 360
  361 FPDSTMK

Type	Start	End	Confidence
Cytoplasmic	1	56	0.97
Transmembrane Helix	57	81	0.84
Non-Cytoplasmic	82	112	0.95
Transmembrane Helix	113	137	0.86
Cytoplasmic	138	166	0.93
Transmembrane Helix	167	187	0.88
Non-Cytoplasmic	188	202	0.90
Transmembrane Helix	203	224	0.80
Cytoplasmic	225	244	0.79
Transmembrane Helix	245	263	0.48
Non-Cytoplasmic	264	269	0.50
Transmembrane Helix	270	295	0.74
Cytoplasmic	296	367	0.68