YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|195173855, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALLECWTQ AGEFMQDRWL SLLDVIGEDP WRLWVLGSTV TIFSVYWVYA TLFTIMDITN  60
   61 RPRFIRKYKI QPGQNEPVDL TKLWRAIKVV LFNLTVVNLL ASWVVFELIY KNNNSLNVRE 120
  121 LPTFTRSVRD LVVFVVLEEI MFYYVHRLMH HKAIYKYVHK KHHEWTAPIA AITLYAHPVE 180
  181 HVLANLLPVA LSIALLGTHV ALAWMIFALA IINSMSDHTG YSFPWSGGSV RFHDYHHAKF 240
  241 NYNYGVIGLL DKLHGTYRAT PEQKPPMRGS GKTVKRKLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.83
Transmembrane Helix	33	56	0.83
Cytoplasmic	57	88	0.82
Transmembrane Helix	89	110	0.82
Non-Cytoplasmic	111	130	0.73
Transmembrane Helix	131	146	0.56
Cytoplasmic	147	164	0.55
Transmembrane Helix	165	179	0.47
Non-Cytoplasmic	180	188	0.55
Transmembrane Helix	189	212	0.83
Cytoplasmic	213	279	0.82