YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54642098, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRTSSSSVA ELGEGDGAAG GAKATGTAHQ EYAEALSLSS QPRKRRWNIR SCSWSTLDLL  60
   61 TVAAIVTALL LILGAIYMHL KQRPHLGRLH ITRKEKELVA VDTESLPVSL DVAAGVAAQS 120
  121 ITTFRPSVLE PSGDCLPCIA VAATDNHPAM CGGRPCGIYR ISWLYWMDAQ GTSDPDSALT 180
  181 QDYEECVPVA SCAEGLVRSY VKRFGYDCDG DGLIGCRDHV MLHLNGPTGC RMGKPLAALA 240
  241 ERRMNKCFTQ KNI

Type	Start	End	Confidence
Cytoplasmic	1	53	0.89
Transmembrane Helix	54	78	0.90
Non-Cytoplasmic	79	253	0.90