YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125978062, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINMDISVTP NYSYIFDFEN DFIHQRTRKW MLENWTWVFY YCGIYMLVIF GGQHFMQNRP  60
   61 RFQLRGPLII WNTMLAMFSI MGAARTAPEL LHVLRHYGLF HSVCVPSYIE QDRVCGFWTW 120
  121 LFVLSKLPEL GDTIFIVLRK QPLIFLHWYH HITVLIYSWF SYTEYTSSAR WFIVMNYCVH 180
  181 SVMYSYYALK AARFNPPRFI AMIITSLQLT QMIIGCAINV WANGFLKTHG TQSCNISQRN 240
  241 INLSIAMYFS YFVLFARFFY KVYLSPGGNK SRRMAATLAG QNAVKQPVDH ISSSGGTQSE 300
  301 DQAAYLRKAK AQ

Type	Start	End	Confidence
Cytoplasmic	1	35	0.85
Transmembrane Helix	36	56	0.92
Non-Cytoplasmic	57	67	0.71
Transmembrane Helix	68	87	0.91
Cytoplasmic	88	143	0.80
Transmembrane Helix	144	162	0.82
Non-Cytoplasmic	163	168	0.76
Transmembrane Helix	169	189	0.85
Cytoplasmic	190	198	0.89
Transmembrane Helix	199	222	0.89
Non-Cytoplasmic	223	244	0.84
Transmembrane Helix	245	264	0.91
Cytoplasmic	265	312	0.94