YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54641023, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDSDIEQA AVPANEIKVE PVAATPEEQL TSSGTTTATT ATTVISVTNG GGEKAAAVAE  60
   61 KPPQQMTAVE VAAVAASATV AAEQVRPATT IGGIELAASK EILFLPLPLG GTKSNMDPAL 120
  121 INFKVLYVLT QLCGLTMIVL VGTWIGQHFG GLGGSSNPKL EFNWHPLFMT IGFIYLYGNS 180
  181 ILVYRGFRTT RKKTLKLTHA GIHMAAFVLT VIALKTVFDS HNLNSPPIPN LYSLHSWLGL 240
  241 SAVIIFSLQY VAGFVAFLAP GIRENYKIAM MPLHIYFGLF GFVLAIASAV MGLTEKAIFA 300
  301 ITSPPYSTLP PAGILANVIG VLYVVFGALV VYLATEPSYR RKPIPEDTAL LSSGSANE

Type	Start	End	Confidence
Cytoplasmic	1	124	0.98
Transmembrane Helix	125	146	0.93
Non-Cytoplasmic	147	163	0.92
Transmembrane Helix	164	187	0.86
Cytoplasmic	188	196	0.90
Transmembrane Helix	197	218	0.90
Non-Cytoplasmic	219	236	0.92
Transmembrane Helix	237	259	0.92
Cytoplasmic	260	272	0.85
Transmembrane Helix	273	293	0.93
Non-Cytoplasmic	294	311	0.88
Transmembrane Helix	312	334	0.93
Cytoplasmic	335	358	0.98