YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125979473, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTARTFKDMM RVPVQFYRTI GEDIYAHRST SPWRSLLLKV YLYGGFINFN LLVIGELVFF  60
   61 YKSIQDFETV RLAIAVAPCI GFSLVSDFKQ FAMAYYKGTL VRLLDELEEM HPKTLERQRA 120
  121 YRMPDFERTM KRVISIFTFL CLAYTTTFSF YPALKASVKF NLLGYETFDR NFGFLIWFPF 180
  181 DATSSNLVYW IVYWDIAHGA YLAGIAFLCA DLLLIVVITQ ICMHFDYVSR RLEEHPCEPG 240
  241 RDRENIEFLV WIVRYHNKCL TLCEHVNNLY SFSLLLNFLM ASMQICFIAF QVTESTVEVI 300
  301 IIYCIFLMTS MVQVFLVCYY GDTLIATSLR VGDAAYNQKW FQCSKTYCQM LKMLIMRSQR 360
  361 PASIRPPTFP PISLVTYMKV ISMSYQFFAL LRTTYNAN

Type	Start	End	Confidence
Cytoplasmic	1	39	0.84
Transmembrane Helix	40	60	0.90
Non-Cytoplasmic	61	68	0.73
Transmembrane Helix	69	88	0.81
Cytoplasmic	89	132	0.78
Transmembrane Helix	133	154	0.89
Non-Cytoplasmic	155	198	0.69
Transmembrane Helix	199	222	0.90
Cytoplasmic	223	269	0.78
Transmembrane Helix	270	292	0.86
Non-Cytoplasmic	293	298	0.74
Transmembrane Helix	299	320	0.95
Cytoplasmic	321	398	0.66