YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54640687, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.86
Transmembrane Helix	25	48	0.89
Non-Cytoplasmic	49	65	0.77
Transmembrane Helix	66	84	0.92
Cytoplasmic	85	90	0.67
Transmembrane Helix	91	114	0.84
Non-Cytoplasmic	115	123	0.54
Transmembrane Helix	124	143	0.82
Cytoplasmic	144	152	0.65
Transmembrane Helix	153	173	0.70
Non-Cytoplasmic	174	185	0.80
Transmembrane Helix	186	207	0.85
Cytoplasmic	208	271	0.97
Transmembrane Helix	272	292	0.93
Non-Cytoplasmic	293	303	0.85
Transmembrane Helix	304	325	0.93
Cytoplasmic	326	333	0.86
Transmembrane Helix	334	353	0.94
Non-Cytoplasmic	354	358	0.81
Transmembrane Helix	359	380	0.90
Cytoplasmic	381	506	0.98
Transmembrane Helix	507	528	0.91
Non-Cytoplasmic	529	540	0.79
Transmembrane Helix	541	558	0.97
Cytoplasmic	559	565	0.85
Transmembrane Helix	566	585	0.96
Non-Cytoplasmic	586	599	0.72
Transmembrane Helix	600	619	0.83
Cytoplasmic	620	632	0.61
Transmembrane Helix	633	651	0.87
Non-Cytoplasmic	652	667	0.82
Transmembrane Helix	668	687	0.95
Cytoplasmic	688	756	0.96
Transmembrane Helix	757	777	0.94
Non-Cytoplasmic	778	783	0.80
Transmembrane Helix	784	804	0.92
Cytoplasmic	805	812	0.88
Transmembrane Helix	813	833	0.92
Non-Cytoplasmic	834	839	0.74
Transmembrane Helix	840	862	0.88
Cytoplasmic	863	872	0.88
Transmembrane Helix	873	894	0.94
Non-Cytoplasmic	895	901	0.83
Transmembrane Helix	902	922	0.92
Cytoplasmic	923	944	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPDQHSCTAP DSSWLSRGHK NQPQWNALGA VSFILISGGM SLAWGAGFAV HSAHREELLM  60
   61 TSHMEVSWYA AATAGAVLGA LCTHRLPLQP VYIFGSCLVL VSGILFLACH ECPAAIITAR 120
  121 YLDGLANGLV FVPAMATVGE ISVRGMRGLL ASTVEQLSCN TGILMQLLYT AVWQVDWNVT 180
  181 IAADQVHGVL SIVYGVVALA LASTLCVESP VNLLLRSDEQ QAVAALRHLQ RPYMVTSETL 240
  241 IQLDEHKHYV ATNREMSWWQ SVRMGLPPLL KLLALRSLNA LCLTLVVWSA LYETAVQVAT 300
  301 HYQAWPYVIF GVMRWCGCFC VLLLVDTTGR KKPTLFGCFS CGSFALAFAT LFGRTPHMIT 360
  361 ALALLFSLQF FAGLGQTASA VNIMQNDKFA APPAGFSSAP PAGYPPQEYP PQGYPQQGYP 420
  421 PQGYPAQGYP QQGYPPQGYP QPGFIQQGNP PQYYGAPPGQ GPPPPNHHYG SVPPPAPTLP 480
  481 PQDAPATVVP PQGCFSRGQT NKPQSNAVGA AGLIFVSGGM NIAWSIGFRG ALFYHATTHD 540
  541 YIAWFIAAII GAVISCLIPN KVPRKYILLV GALLVTVGGI EMAAIRSNGG AVLAGSYLDG 600
  601 IGNGLVFAPF MALAGDVSVP YMRGLVTASL EQMCFGIGIF LQIIYTSTWA SSGFYYSSSG 660
  661 FSPENLKGIL SAVYGGLSLL LGALLCIESP VQMLARGDEP GAIDTLRRLQ RPYTLTNATY 720
  721 EQLAEHKRYL AENRDLSTSQ SIVQALPAFL RLTYLRAMNA LSISSIVVLV LIIAILANGG 780
  781 SSTGWLVGFA VCRWAGNFIS TFIMESVGRK KPLLLGLLGC SCLGFAIGSK YSFYYGMGGM 840
  841 AVMMLIFQVF AGLAFVSTSP YLSEAYPLAV KQYFIAFTFI AEMLVFIIVG SAHFNIYDGG 900
  901 NYFYAVGGMY LFAFLAGIFC LPETRLTTLR GAQQQFSGFI NRSF