YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125778478, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPSARARY IANKADNQIL PKKPPKRLGL NGNNKDAAPA GNKKEKESKK RKQITSSVPE  60
   61 ASNANPITPS VGLDTAFKTF VSARLCSAIW AYIADCDETF NYWEPLHYII NGHGLQTWEY 120
  121 SPEFGLRSYT YLLLQGVPGY FYQKIFNPSP ILIFYMVRCM LGFGCAVMER FMYKSICQEF 180
  181 GIHIGRLWLI FQLFSVGMFV SSTALLPSSF SMYFGCSALA AWWQQHYSLA IFFTAISALL 240
  241 GWPFAALIGV PLVLELLLRQ RDWKTFVQWT LISGATIAIP MIAIDTSYFG KLTFAPLNIV 300
  301 WYNVFTSHGP NIFGTEPISY YIVNGFLNFN IIWLLALQLP IMLVMDYLIV PAKSKSTLNF 360
  361 PHYISLAPLY LWLLVFFAQP HKEERFLFPV YPLISLCGAI TVDVYQRIFF RFKMLIFKIK 420
  421 AGVHYLDHTM FIAIIVMVAS TLLGLSRVFS LYRNYHAPMD LMLELNQFKV TPQYNPNQIY 480
  481 NVCIGKDWHR YPGSFFFPAR NFRLRFLKSE FRGMLPAYYV DGPNATQVVH PYFNDLNQEN 540
  541 EHMYFDYDRC DFLVDFDEGK YTALEPSYSK RTKDWSIMKS LPFLIPEKSH QLLRAFYVPF 600
  601 LTDNHIQYGD FNLLKRKTKR NGR

Type	Start	End	Confidence
Non-Cytoplasmic	1	150	0.59
Transmembrane Helix	151	173	0.83
Cytoplasmic	174	187	0.87
Transmembrane Helix	188	208	0.91
Non-Cytoplasmic	209	228	0.83
Transmembrane Helix	229	254	0.88
Cytoplasmic	255	265	0.88
Transmembrane Helix	266	284	0.94
Non-Cytoplasmic	285	328	0.83
Transmembrane Helix	329	350	0.84
Cytoplasmic	351	358	0.86
Transmembrane Helix	359	379	0.92
Non-Cytoplasmic	380	386	0.81
Transmembrane Helix	387	409	0.87
Cytoplasmic	410	424	0.85
Transmembrane Helix	425	445	0.91
Non-Cytoplasmic	446	623	0.90