YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125778350, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKKDAKSS AKQPQKTQKK KEGSGGGKAK KKKWSKGKVR DKLNNQVLFD KPTYEKLYKE  60
   61 VPAYKLITPS VVSERLKIRG SLAKRALIEL RDKGLIKQVV QHHSQVIYTR ATKGDEAFTR 120
  121 FPIMIPLSHK DRSSFGYRVK EQLNSWRRLI FSDRNSRNLF LFLLLNLSFA FVELFYGILT 180
  181 NSLGLISDSF HMFFDCTGLL AGLAASVITK WKANDKFSYG YVRAEVLAGF VNSLFLLFIA 240
  241 FFILSEGVER LLEPPEVKHE RLFVVSVLGL LVNLVGIYAF NHGGHGHSHG GGGHGHSHGG 300
  301 GGSVANHGHG HSHSHSDINN HNHEAITLDN GHGHSHDHDS HGHSHGDMGG SNSQIMRGVF 360
  361 LHILADTLGS VGVIISAVLM QMFGWMIADP ICSIFISLLI ALSVLGLIKE SILILMQRQP 420
  421 SSLDRSLPQC YQKVTGLAGV YAVQEPHFWT LCSDVYVGAL KLEVSKNVDP KYVVTHTRMI 480
  481 FESVGVKQIY IQLDYV

Type	Start	End	Confidence
Cytoplasmic	1	157	0.96
Transmembrane Helix	158	179	0.93
Non-Cytoplasmic	180	189	0.83
Transmembrane Helix	190	211	0.86
Cytoplasmic	212	220	0.84
Transmembrane Helix	221	244	0.86
Non-Cytoplasmic	245	261	0.83
Transmembrane Helix	262	281	0.94
Cytoplasmic	282	357	0.91
Transmembrane Helix	358	380	0.90
Non-Cytoplasmic	381	386	0.70
Transmembrane Helix	387	408	0.91
Cytoplasmic	409	496	0.92