YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125778023, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQYSHVKYT TSPTPSVVSG YSSASRLHSH LPPPANHRKD CLSATTKSYK YLRRLLKFNQ  60
   61 MDFEFALWQM IYLLIAPQKV YRNFNYRKQT KSQFARDDPA FLVLLIVCLC VTSLGFAYVL 120
  121 GLSLLQSIGF IFYVIFVDCL LAGVIIASFF WAITNRYLRT NSLEPDIEWG YAFDVHLNAF 180
  181 FPPLMLLHCI QLFFYNWLIS HTWFISRFLG NTFWLFGMSY YVYITFLGYN CIPHLKNTRL 240
  241 ILIALPIIFL LYLVVTIIGW NATISFVNFY KYRVY

Type	Start	End	Confidence
Cytoplasmic	1	99	0.84
Transmembrane Helix	100	122	0.93
Non-Cytoplasmic	123	129	0.79
Transmembrane Helix	130	153	0.93
Cytoplasmic	154	174	0.83
Transmembrane Helix	175	195	0.87
Non-Cytoplasmic	196	211	0.69
Transmembrane Helix	212	232	0.87
Cytoplasmic	233	239	0.83
Transmembrane Helix	240	262	0.90
Non-Cytoplasmic	263	275	0.84