YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125777947\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEEKGAGS PEAPTLDSEI NLGRGPRATK PRWKSGGSND NDGGRSGSGG QTDTGSPKEK  60
   61 IKWKADEKPK KELNDPRFRI RPLQQVVSAC TGAMITALFM TPLDVIKTRM QTQQSPSSKC 120
  121 FFYCNGLMDH LLSYHHNGPQ QPPKPLFTNS LDALFKISRN EGPSALWSGL GPTLVSALPS 180
  181 TIIYFVAYEQ FKARYIHIYE QYFKEKAGVV ETMSSINSGD LPLPVVVPML SGVTARICAV 240
  241 TVVSPIELVR TKMQAQPMTY AQMMGFVRNV LALQGIWGLW RGLPPTILRD VPFSGIYWPI 300
  301 YEHTKRTFGS STQPSFGLSF VSGVLAGSVA ALVTTPFDVV KTHEQIEFGE RVIFTDSPTK 360
  361 DVHKRSTFSW LMAIYRSQGL PGLFAGYGPR LFKVAPACAI MISTFEYSKS YFFYYNVRQH 420
  421 NETLLLNNPN ATLVEEDDIE

Type	Start	End	Confidence
Cytoplasmic	1	164	0.64
Transmembrane Helix	165	187	0.81
Non-Cytoplasmic	188	224	0.64
Transmembrane Helix	225	244	0.58
Cytoplasmic	245	263	0.71
Transmembrane Helix	264	280	0.72
Non-Cytoplasmic	281	315	0.72
Transmembrane Helix	316	337	0.78
Cytoplasmic	338	440	0.67