YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54639452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	42	0.86
Non-Cytoplasmic	43	131	0.96
Transmembrane Helix	132	153	0.93
Cytoplasmic	154	161	0.87
Transmembrane Helix	162	181	0.96
Non-Cytoplasmic	182	187	0.79
Transmembrane Helix	188	210	0.89
Cytoplasmic	211	219	0.84
Transmembrane Helix	220	242	0.92
Non-Cytoplasmic	243	248	0.83
Transmembrane Helix	249	267	0.96
Cytoplasmic	268	335	0.99
Transmembrane Helix	336	355	0.92
Non-Cytoplasmic	356	364	0.75
Transmembrane Helix	365	386	0.94
Cytoplasmic	387	393	0.91
Transmembrane Helix	394	413	0.94
Non-Cytoplasmic	414	420	0.73
Transmembrane Helix	421	442	0.87
Cytoplasmic	443	451	0.82
Transmembrane Helix	452	473	0.87
Non-Cytoplasmic	474	480	0.80
Transmembrane Helix	481	500	0.95
Cytoplasmic	501	555	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDYVLEDL MGKLGEFGKY QFLQFFLQVL SALTAGMHML SLVTVSAVPE HRCFIEGLDD  60
   61 SILAVGPWNA SALKYAIPTK ANGELESCLM YDPTDLDSNT TIACEKYVYD TTYYKTSRTI 120
  121 DWNHVCDRRW MGAIVQTVFM LGVFTGAVTL GGLADKIGRK TVFCWSALFQ LIIGVGVAFI 180
  181 PEYFSFMVAR YLLGIVGSAG AYICGFVLTM ELVGPTKRTV CGITFQAVFA GGIMLVAGWG 240
  241 ALIQDRQWLQ VIYGLHGCLF LAHWWLLDES PRWLWMQGRA AEAVDIVAKG LRINGSGIPV 300
  301 DKDYFVQKAK QQAAVEEKSS AGLSDLFRTP NLRMKTLNVC LCWFANSIVY YGLSLSAGKL 360
  361 YGNPYLILFI MGLVEFPSYI TIVFVLDRLG RRSITSTLML SGGLCCIIAA FIAQGSTTST 420
  421 AVVMAGKLLI AGSFAVIYNY SAELFPTVVR NSAMGLGSMC ARLSGALTPL ITLLDSFDPK 480
  481 IPAVLFGVVA LASGFWVMFL PETMNQPMPE SIEDGENFGK GDTWFSQCAG RKKRQNSIYP 540
  541 DDPEQMVPLK NIESK