YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54639371, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHIFKLQEY CLRAMGHSHE PHSSGSGGGA LSLKHVVSLL FAASAQYPLI HNVVYHRNDM  60
   61 ELATAGMSVL LTNLLTLFKI ATFLVYKQDF WRMIQSFRQM HQQSSRNIRD GDGYGYVAEA 120
  121 NKLASLLGRA YCTSCAATGL YFMVSPILKI IANSWRGTTY VRELPMPLRL PFNYVDSPGY 180
  181 EIGFVYILLV TIVVVSYASA VDGLFISFAI NLRAHFQTLQ RDIRTTDFSQ SEHEFRKALK 240
  241 DLVDYHVRLL TLSKRLRVMY MPIVFGQFFI TSLQVGVIIY QLVTNMDSIM ALLVYLSFLG 300
  301 SIMLQLFIYC YGGEIIKVES HRVDVAVQLS NWYQAAPKLR RSLAFIILRS QRDLLIKAGF 360
  361 YEASLGNFLA ICRAALSFIT LIKSIE

Type	Start	End	Confidence
Cytoplasmic	1	30	0.83
Transmembrane Helix	31	50	0.76
Non-Cytoplasmic	51	61	0.83
Transmembrane Helix	62	86	0.82
Cytoplasmic	87	129	0.94
Transmembrane Helix	130	151	0.87
Non-Cytoplasmic	152	181	0.96
Transmembrane Helix	182	206	0.88
Cytoplasmic	207	257	0.95
Transmembrane Helix	258	282	0.87
Non-Cytoplasmic	283	290	0.78
Transmembrane Helix	291	312	0.94
Cytoplasmic	313	386	0.78