YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125777395, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALIMKYIDT VTRYLDSHGD SRTKDWPMMS SPFPTLAVCL TYVYLVKVLG PRLMENRKPL  60
   61 HLQNTLVLYN AIQVVFSAWL FYEVGISGWL TGHYSFRCQP VDYSNNPRTL RMVHACWWYY 120
  121 FSKFTEFMDT IFFVLRKKTS QVTTLHVIHH GCMPMSVWFG VKFTPGGHST FFGLLNTFVH 180
  181 IVMYTYYMFS AMGPQYQKYL WWKKYLTTLQ MVQFILIMVH AFQLLFIDCN YPKAFVWWIG 240
  241 MHAVMFFFLF NEFYKAAYRN RLMRKNALLA NGHAKPNGYC KSINAHDDLA MPQPTAASVT 300
  301 PVSKANGSAA PLTNGHANGL SNGYKQLANG NAPASTTTHN GSAHKGGAGP NGLLTNGYAT 360
  361 KLLDDASQDL KQRKTQK

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.74
Transmembrane Helix	28	46	0.73
Cytoplasmic	47	65	0.73
Transmembrane Helix	66	86	0.84
Non-Cytoplasmic	87	167	0.66
Transmembrane Helix	168	189	0.88
Cytoplasmic	190	205	0.87
Transmembrane Helix	206	227	0.90
Non-Cytoplasmic	228	233	0.95
Transmembrane Helix	234	254	0.94
Cytoplasmic	255	377	0.99