YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54639340, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIILQEAQE WYRELLDNKS DPRVKDFFLL SSPLPTLGMC IFYAYFSKSL GPRLMAKRKP  60
   61 MELRSVLVIY NAIQTIFSAW IFYEYLMSGW WGHYSFKCQP VDYGHSPLAL RMVNICWWYY 120
  121 ISKFTEFFDT LFFILRKKNE HVSTLHVIHH GCMPFSVWMG LKFAPGGHST FFALLNAFVH 180
  181 IVMYFYYMIA AMGPKYQKFI WWKKYLTTFQ MVQFVAIFTH QFQLLFRDCD YPKGFMVWIG 240
  241 LHGVMFLFLF SDFYKAKYLT VTRRRRQAVK ANGHANGHGL HTNGHSKHLG NGDALVANGS 300
  301 NKGACMPVLE DEYVTRNGNG HAGGGGFEDG FFKEGALSSN ESILNPDSSS SSLHQRKVK

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.83
Transmembrane Helix	27	46	0.80
Cytoplasmic	47	65	0.89
Transmembrane Helix	66	86	0.90
Non-Cytoplasmic	87	106	0.88
Transmembrane Helix	107	121	0.63
Cytoplasmic	122	141	0.57
Transmembrane Helix	142	161	0.75
Non-Cytoplasmic	162	169	0.68
Transmembrane Helix	170	190	0.91
Cytoplasmic	191	204	0.80
Transmembrane Helix	205	224	0.89
Non-Cytoplasmic	225	234	0.88
Transmembrane Helix	235	256	0.91
Cytoplasmic	257	359	0.99