YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125777187, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGKTPSTVEK AEKSEPITTE RFLRYANIFY LSIGMEAYDH QGRRKMIELI LRCIFIALIL  60
   61 NLNAVLLSEL IYVFLAIGKG TNFLEATMNL SFIGFVIVGD LKVWHIWRKR DQLTNVVREM 120
  121 EKLHPKEGHH QKAYDVESHL SGYSRYSKFY FGMHLVLIWT YNLYWAVYYL VCDFWLGIRH 180
  181 FVRMLPYYCW VPWDWSTNSS YYLMYVSQNM AGQTCLSGQL AADLMMCALV TLLVMHFIRL 240
  241 GRGIEEHVAG LLSPQQDLEF LQAAVVYHQR LLQLCHNINE IFGVSLLCNF VSSAFIICFV 300
  301 GFQMTIGGKI DNLVMLVLFL FCALVQVFMI TTYAQRLLDA SEHIGEAVYN HDWFQADLPY 360
  361 RKMLIFMVRR SQQASRLKAT IFLNVSLVTV SDLLQLSYKF FALLRTMYV

Type	Start	End	Confidence
Cytoplasmic	1	52	0.96
Transmembrane Helix	53	75	0.91
Non-Cytoplasmic	76	82	0.84
Transmembrane Helix	83	104	0.87
Cytoplasmic	105	149	0.96
Transmembrane Helix	150	172	0.79
Non-Cytoplasmic	173	218	0.85
Transmembrane Helix	219	238	0.90
Cytoplasmic	239	280	0.95
Transmembrane Helix	281	306	0.84
Non-Cytoplasmic	307	312	0.83
Transmembrane Helix	313	334	0.91
Cytoplasmic	335	378	0.94
Transmembrane Helix	379	398	0.70
Non-Cytoplasmic	399	409	0.68