YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125777174, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFMKYANFF YKAVGIEPYT TDSRPQANSL KASIVFWANV LNLGAIVTGE ILYLGVSLAD  60
   61 GKLLDAVAVM SYIGFVIVGT SKMFFIWWKK PALSDMVRDL EHIYPHGKEA EEEYKLQSYL 120
  121 RSSSRISVTY ALLYSVLIWT FNLFSIMQFL VYEKLLHLRV VGLALPYTVY YPWNWEAPWS 180
  181 YYMLLFCENF AGYTSAAGQI STDLLLCAVA TQVVMHFDHL STVLEGHELS GKWEEDSRFL 240
  241 VNTVKYHQRI LRLSEVLNDI FGIPLLLNFM VSTFVICFVG FQMTVGVPPD IMIKLFLFLF 300
  301 SSLCQVYLIC HYGQLIADSS LGLSNAAYKQ NWNHADVRYR RALVFVIARA QKPAHLKATV 360
  361 FMNITRATMT DLLQISYKFF ALLRTMYVQ

Type	Start	End	Confidence
Cytoplasmic	1	33	0.95
Transmembrane Helix	34	56	0.90
Non-Cytoplasmic	57	65	0.79
Transmembrane Helix	66	86	0.93
Cytoplasmic	87	127	0.92
Transmembrane Helix	128	150	0.85
Non-Cytoplasmic	151	154	0.80
Transmembrane Helix	155	174	0.52
Cytoplasmic	175	259	0.55
Transmembrane Helix	260	283	0.88
Non-Cytoplasmic	284	290	0.55
Transmembrane Helix	291	313	0.84
Cytoplasmic	314	389	0.63