YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54639131, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALRQFYLE IPVVTRAYTT VCVLTTLAVH LDLVSPLQLY FNPTLIVRKF QIWRLATTFL  60
   61 YFGTIGITFF FNMVFTYRYC RMLEDGSFRG RSSDFVMMFI FGGVLMTFFG IFVNLLFLGQ 120
  121 AFTLMLVYVW SRRNPSVPMN FFGVLNFQAP YLPWVLLCCS MILGNTVWVD IIGMGVGHIY 180
  181 YVLEDVYPTL SNGYRLIKTP YFLKRLFNEH IERNYQAAAE DRPGGFPWGG EGMPTELRAL 240
  241 GDGYVRDEFR RHLKCNPMEA QLFMTEWARY ASTITKQLGL RGKPQGELGE EMDPNAVEML 300
  301 KDDQVVQLYE LMLAAKGLDG DTITADDVRG SSKSK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	34	0.88
Non-Cytoplasmic	35	54	0.88
Transmembrane Helix	55	76	0.90
Cytoplasmic	77	94	0.90
Transmembrane Helix	95	118	0.92
Non-Cytoplasmic	119	149	0.84
Transmembrane Helix	150	169	0.93
Cytoplasmic	170	335	0.95