YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54639110, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIKGDSERRD LFVFVRYTMC IAAMYPFGYS LQGSSFLGLL VRVLDWFYEI FNYFVSVHIL  60
   61 GLYICTIYIN YGQGDLDFFV NCMIQTIIYL WTIAMKLYFR RFRPKMLDEI MSIINENYHT 120
  121 RSALGFSYVT MSGAHHVSKL WIKTYVYCCY IGTIFWLVLP IAYRDKSLPL ACWYPFDYTQ 180
  181 PIVYETVFFL QAIGQIQVAA SFASSSGLHM VFCVLLSGQY DVLFCSLKNV LATSYIHMGG 240
  241 NMAELRQLQS EQSIADAEPN QYAYSHEEQT PLEQLLQHPP QDESSRDFLK AFKRSFRHCI 300
  301 DHHRYIVEVL KKMERFYSPI WFVKIGEVTF LMCLVAFVST KSTTANSFMR MVSLGQYLLL 360
  361 VLYELFIICY FADVVYQNSQ RSGEALWRSP WQRHLREIRS DYMFFMLNAR KQFQLTAGKI 420
  421 TNLNVDRFRG TITTAFSFLT LLQKMDAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.37
Transmembrane Helix	12	41	0.63
Cytoplasmic	42	49	0.37
Transmembrane Helix	50	70	0.68
Non-Cytoplasmic	71	77	0.57
Transmembrane Helix	78	99	0.84
Cytoplasmic	100	140	0.70
Transmembrane Helix	141	163	0.85
Non-Cytoplasmic	164	195	0.65
Transmembrane Helix	196	216	0.63
Cytoplasmic	217	319	0.93
Transmembrane Helix	320	340	0.91
Non-Cytoplasmic	341	353	0.81
Transmembrane Helix	354	376	0.81
Cytoplasmic	377	448	0.87