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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NMDA1_DROPS
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTDSPAAA RFVYRCLLFA PAIVVGLLLP LTLPPIAAAQ RHTASDNPST YNIGGVLSNS  60
   61 ESETYFHTII SHLNFDQQYV PRKVTYYDKT IRMDKNPIKT VFNVCDKLIE NRVYAVVVSH 120
  121 EQTSGDLSPA AVSYTSGFYS IPVIGISSRD AAFSDKNIHV SFLRTVPPYY HQADVWLEML 180
  181 SHFAYTKVII IHSSDTDGRA ILGRFQTTSQ TYYDDVDVRA TVELIVEFEP KLESFTEHLI 240
  241 DMKTAQSRVY LMYASTEDAQ VIFRDAGEYN MTGEGHVWIV TEQALFANNT PDGVLGLQLE 300
  301 HAHSDKGHIR DSVYVLASAI KEMISNETIA EAPKDCGDSA VNWESGKRLF QYLKSRNITG 360
  361 ETGQVAFDDN GDRIYAGYDV INIREHQKKH VVGKFSYDSM RAKMRMNIND SEIIWPGKQN 420
  421 RKPEGIMIPT HLKVLTIEEK PFVYVRRMGD DEFRCEPDER PCPLFNATDS TANEYCCRGY 480
  481 CIDLLIELSK RINFTYDLAL SPDGQFGHYL LRNNTGAMTL RKEWTGLMGE LVNERADMIV 540
  541 APLTINPERA EYIEFSKPFK YQGITILEKK PSRSSTLVSF LQPFSNTLWI LVMVSVHVVA 600
  601 LVLYLLDRFS PFGRFKLSHS DSNEEKALNL SSAVWFAWGV LLNSGIGEGT PRSFSARVLG 660
  661 MVWAGFAMII VASYTANLAA FLVLERPKTK LSGINDARLR NTMENLTCAT VKGSSVDMYF 720
  721 RRQVELSNMY RTMEANNYAT AEQAIQDVKK GKLMAFIWDS SRLEYEASKD CELVTAGELF 780
  781 GRSGYGVGLQ KGSPWTDSVT LAILEFHESG FMEKLDKQWI FHGHVQQNCE LFEKTPNTLG 840
  841 LKNMAGVFIL VGVGIAGGVG LIIIEVIYKK HQVKKQKRLD IARHAADKWR GTIEKRKTIR 900
  901 ASLAMQRQYN VGLNSTHPPG TISLAVDKRR YPRLGQRLGP ERAWPGDAAD VLRTRRPYEL 960
  961 GKPGQSPKVM VATPAMLGRT RPQQNILPPR YSPGYTSDVS HLVV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle