YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125776657, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.10
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLRSRKRE KSIKGSFDVG RIMDEETSEA NIKSQNIDNS QQTRMKSGKE GQDLMSSRRT  60
   61 VSESSSEDPG REGINASNGN GMWRNELKIS ADSSSAQPEK QQLQVQHTSL LHNERFSDIV 120
  121 DVVLRCALVT IFFKLETMWA FKREIHAEEL WLYKNPRRPD IIKGGELLFW VIVAPLIVTV 180
  181 VFYVFTKDKR DFRAASWAWT LALCMNGFPT SLLKITVGRP RPDFFYRCFP DGVMVLNSSS 240
  241 TSDSSSILDF NCTGIASEIN EGRKSFPSGH SSFAFASFGF IAYYVGAKLH AFDARGRGHT 300
  301 WRLCIAVIPL VIATLVAVSR TCDYHHHWQD VTVGAIIGLL TGYISYRQYY PSIFGPQAGK 360
  361 PSIRWPRRLG NKYDKQREAD DNGAGGDMLR RPLLGGKEQT KWY

Type	Start	End	Confidence
Cytoplasmic	1	166	0.59
Transmembrane Helix	167	186	0.96
Non-Cytoplasmic	187	194	0.48
Transmembrane Helix	195	217	0.86
Cytoplasmic	218	226	0.47
Transmembrane Helix	227	241	0.10
Non-Cytoplasmic	242	268	0.57
Transmembrane Helix	269	287	0.83
Cytoplasmic	288	298	0.54
Transmembrane Helix	299	319	0.93
Non-Cytoplasmic	320	325	0.57
Transmembrane Helix	326	346	0.79
Cytoplasmic	347	403	0.71