YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54639039\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNEDSSATM SSSSGGGGGI KKVFQRLSQT YQSTLDRSTP HTRLRWVFAG FVLLLFVLRI  60
   61 FIYQGWYIIC YALGIYHLNL FIAFLTPKID PEFDPYAQDD EDDGPNLPTR SNEEFRPFIR 120
  121 RLPEFKFWLS VTKSTGIGLF CTFFDFFNVP VFWPILVMYF ITLFCITMKR QIKHMIKFKY 180
  181 LPFTRNKPRY QRVNDLAGTN SVAGNSK

Type	Start	End	Confidence
Cytoplasmic	1	43	0.93
Transmembrane Helix	44	63	0.90
Non-Cytoplasmic	64	66	0.69
Transmembrane Helix	67	86	0.73
Cytoplasmic	87	124	0.73
Transmembrane Helix	125	144	0.71
Non-Cytoplasmic	145	150	0.66
Transmembrane Helix	151	168	0.94
Cytoplasmic	169	207	0.96