YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54639005, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.90
Transmembrane Helix	28	47	0.91
Cytoplasmic	48	64	0.91
Transmembrane Helix	65	86	0.92
Non-Cytoplasmic	87	97	0.78
Transmembrane Helix	98	119	0.92
Cytoplasmic	120	134	0.85
Transmembrane Helix	135	154	0.94
Non-Cytoplasmic	155	175	0.85
Transmembrane Helix	176	196	0.89
Cytoplasmic	197	243	0.91
Transmembrane Helix	244	263	0.91
Non-Cytoplasmic	264	288	0.87
Transmembrane Helix	289	310	0.90
Cytoplasmic	311	366	0.95
Transmembrane Helix	367	390	0.90
Non-Cytoplasmic	391	395	0.77
Transmembrane Helix	396	416	0.94
Cytoplasmic	417	483	0.97
Transmembrane Helix	484	506	0.89
Non-Cytoplasmic	507	516	0.77
Transmembrane Helix	517	534	0.51
Cytoplasmic	535	827	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYCPPNVTL SEVWTKHGIS HCFMDTVGPS VYGGFILLFG CIQLLMYRRY ATRITDPTQI  60
   61 SKSRLYALQL FLLFLLPVLA VMRFFLNARI YTDSAVYGYM IYSTVVVCFA YPFSICLILK 120
  121 ERFYLLPSVP TRGHGLVLLL FWTLAFINEA LAFINLRHED WWFNLKSNKD QIEMGLFVTR 180
  181 FLVSLLIFVL GLKAPGIMAP YHQRLVDNDS SSESQANTQT GSAFRNGWRK LRKIFPYLWP 240
  241 KKDLALQIAV LICIMMLIAG RVIKLFLPIY RKKLVDSLTI EPIIFRYDFV LIYVALSFLQ 300
  301 GGGTGTMGLF NNLRTFLWIR VQQYTTREIE IDLFRHLHQL SLRWHLQRKT GEVLRVMDRG 360
  361 TDSINNLLNY IVFSIMPTIL DLLVAVAFFI YAFNWWFGLI VFLTMFLYIA STIAITEWRT 420
  421 KYQRRMNMAD NEQRARSVDS LLNFETVKYY GAENYEVDCY REAILKYQKE EFLSMLTLNM 480
  481 LNTAQNIILC LGLLAGSLLC VYLVVHHQTL TVGDFVLFST YLMELYMPLN WFGTYYRAIQ 540
  541 KNFVDMENMF DLLREDEEIV DAPGCAPLLT AGGGIEFSNV TFGYTPEKIV LRNVNFTVPA 600
  601 GKTVAIVGPS GAGKSTIMRL LFRFYDVQTG AILIDGQNIK LVQQQSLRKA IGVVPQDTVL 660
  661 FNNTIFYNIE YAKLGASDEA VYEAARAADI HEKILSFPDR YETKVGERGL RLSGGEKQRV 720
  721 AIARTLLKAP IIVLLDEATS ALDTHTERNI QAALARVCAN RTTIIVAHRL STIIHADEIL 780
  781 VLQDGSIVER GRHEQLVQRD DGIYADMWQQ QLKNLDAEQN AADNAEA