YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125776087, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQRLTLRRR LSYNTRSNKR RIVRTPGGRL VYQYVKKNKT VPRCGQCKEK LKGITPSRPS  60
   61 ERPRMSKRLK TVARTYGGVL CHGCLRERIV RAFLIEEQKI VKALKSQREA LVKPVKKVEV 120
  121 KKPTKAGATK KPAGKTAGKS GVKAAGKKPA PKGVVKSKKT PSSSLGTQHQ RNQRRHSKTM 180
  181 PEHSPAPTPH RAIYGFAFYM LFTVLFIVYV AWALLPFEFG LQPYLPDKYF AVFVPFLVLM 240
  241 FAWFFAFLIY PAINMSLTVN VDSIHSVVDP KLALPKGTAF TSWSQLKNSK DSPTKQKKPT 300
  301 PINCNMCKTS HKPITRAPIA PLRFLDLQEV NTAYYN

Type	Start	End	Confidence
Cytoplasmic	1	192	0.96
Transmembrane Helix	193	215	0.90
Non-Cytoplasmic	216	228	0.89
Transmembrane Helix	229	250	0.90
Cytoplasmic	251	336	0.94