YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638865, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRPHHLAPML SAMWQHCKLL CLLVVFLLLC ETVQANPDAK RLYDDLLSNY NRLIRPVSNN  60
   61 TDTVLVKLGL RLSQLIDLNL KDQILTTNVW LEHEWQDHKF KWDPSEYGGV TELYVPSEHI 120
  121 WLPDIVLYNN ADGEYVVTTM TKAILHYTGK VVWTPPAIFK SSCEIDVRYF PFDQQTCFMK 180
  181 FGSWTYDGDQ IDLKHISQKN DKDNKVEIGI DLREYYPSVE WDILGVPAER HEKYYPCCAE 240
  241 PYPDIFFNIT LRRKTLFYTV NLIIPCVGIS YLSVLVFYLP ADSGEKIALC ISILLSQTMF 300
  301 FLLISEIIPS TSLALPLLGK YLLFTMLLVG LSVVITIIIL NIHYRKPSTH KMRPWIRAFF 360
  361 IKRLPKLLLM RVPKDLLRDL AANKINYGLK FSKSKFGQAL MDEMQMNSGG SSPDSIRRMQ 420
  421 GRAGVGGCNG MHVTTATNRF SGLVGALGGG LSTLSGYNGL PSVLSGLDDS LSDVAARKKY 480
  481 PFELEKAIHN VMFIQHHMQR QDEFNAEDQD WGFVAMVMDR LFLWLFMIAS LVGTFVILGE 540
  541 APSLYDDTKA IDVQLSDVAK QIYNLTEKKN

Type	Start	End	Confidence
Signal Peptide	1	35	0.55
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	255	0.98
Transmembrane Helix	256	279	0.92
Cytoplasmic	280	286	0.90
Transmembrane Helix	287	308	0.87
Non-Cytoplasmic	309	321	0.76
Transmembrane Helix	322	344	0.93
Cytoplasmic	345	439	0.97
Transmembrane Helix	440	460	0.55
Non-Cytoplasmic	461	520	0.62
Transmembrane Helix	521	539	0.96
Cytoplasmic	540	570	0.60