YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125775189, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.97
Transmembrane Helix	96	117	0.84
Non-Cytoplasmic	118	123	0.71
Transmembrane Helix	124	145	0.70
Cytoplasmic	146	165	0.70
Transmembrane Helix	166	186	0.77
Non-Cytoplasmic	187	190	0.55
Transmembrane Helix	191	209	0.77
Cytoplasmic	210	214	0.67
Transmembrane Helix	215	236	0.76
Non-Cytoplasmic	237	239	0.56
Transmembrane Helix	240	259	0.71
Cytoplasmic	260	288	0.73
Transmembrane Helix	289	308	0.84
Non-Cytoplasmic	309	314	0.66
Transmembrane Helix	315	333	0.64
Cytoplasmic	334	345	0.62
Transmembrane Helix	346	367	0.76
Non-Cytoplasmic	368	397	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAVRHLLKS RKHFPYAYAA ATTTKSTLPM PAVPARVLIG LHTDSDCRNK RLPQIQELSF  60
   61 RKMSSLPTSK KPGSLLEELY AATKPYAQLM RIDRPIGTYL LFWPCAWSIA LSADAGCWPD 120
  121 LTMLGLFGTG ALIMRGAGCT INDLWDKDID AKVERTRTRP LASGQISQFD AIVFLSAQLS 180
  181 LGLLVLVQLN WQSILLGASS LGLVITYPLM KRVTYWPQLV LGMAFNWGAL LGWCATQGSV 240
  241 NLAACLPLYL SGVCWTIVYD TIYAHQDKLD DLQIGVKSTA LRFGENTKVW LSGFTAAMLT 300
  301 GLSTAGWACD QTLPYYAAVG VVGAHLVQQI YSLNIDNPTD CAKKFLSNHQ VGLILFLGIV 360
  361 LGTLLKANDT KNQPQPALTS SAASSYASLT QKPEVLS