YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638486, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFGMVSAV SGFIKIRYLL DKAVIDNMVF RCHYRITTAI LFTCCIIVTA NNLIGDPISC  60
   61 INDGSIPMHV INTFCWITYT FTIPGQQHRQ IGTDVAGPGL GNEYGQEKRY HSYYQWVPFV 120
  121 LFAQGLMFYI PHWIWKNMED NKIRMITDGL RGMVSVPDDY RRERQDRILK YIENSLNTHN 180
  181 GYSFAYYICE LLNFVNVIVN IFMVDKFLGG AFMSYGTDVV KFSNMDQDKR FDPMIEIFPR 240
  241 LTKCTFRKFG PSGSLQKHDT LCVLALNILN EKIYIFLWFW FIILATISGV AVLYSLMVIM 300
  301 MPTTRETIIK RSYRSGQRKE IACLVRRLEI GDFLILHFLS QNLSTRSYYD MLQQLCSRLG 360
  361 TSRTPSAPST LEMNPISHPI YPPVQNFAGG KETET

Type	Start	End	Confidence
Cytoplasmic	1	33	0.83
Transmembrane Helix	34	55	0.76
Non-Cytoplasmic	56	113	0.65
Transmembrane Helix	114	135	0.85
Cytoplasmic	136	183	0.71
Transmembrane Helix	184	204	0.64
Non-Cytoplasmic	205	275	0.56
Transmembrane Helix	276	301	0.87
Cytoplasmic	302	395	0.57