YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638331, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.65
Transmembrane Helix	55	73	0.90
Non-Cytoplasmic	74	80	0.51
Transmembrane Helix	81	102	0.79
Cytoplasmic	103	115	0.59
Transmembrane Helix	116	150	0.62
Non-Cytoplasmic	151	160	0.67
Transmembrane Helix	161	185	0.83
Cytoplasmic	186	196	0.78
Transmembrane Helix	197	220	0.86
Non-Cytoplasmic	221	248	0.89
Transmembrane Helix	249	270	0.88
Cytoplasmic	271	276	0.73
Transmembrane Helix	277	295	0.87
Non-Cytoplasmic	296	300	0.82
Transmembrane Helix	301	322	0.91
Cytoplasmic	323	332	0.81
Transmembrane Helix	333	359	0.76
Non-Cytoplasmic	360	683	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDMLVLLTAA AHLVYTPFTK VEESFNLQAM HDILYLRSNF TQYDHHEYPG VVPRTFIGPL  60
   61 VVSMLSAPFV LLFETLRLNK FWAQYVVRLV LAGAISLAWN NLRQAVTKIY GVEVRLWFTA 120
  121 ITITQFHFMF YMTRPLPNIF ALPIVLYAIA YWMRGQQKPF IVCSGIAILV FRSELALFLG 180
  181 LLLAINLLQR QLSIDRLLKI ALPAGVCILA ASVLVDSFFW RRLLWPEGEV LWYNTILNKS 240
  241 SNWGTSPFLW YFYSALPRAM GASLLFVPIG CVLEPRIRPL ALSALVFVLL YSVLPHKELR 300
  301 FIIYVFPVLN IAAACACQRI WMNCAKSTWH SCLALGSVGH LLLNVFVTVF LLVISGTNYP 360
  361 GGAALSRLHR LESATPNVSV HIANLAAQSG VSRFMEIRDE WTYSKDETMN YTQAEIARYT 420
  421 HLLVEAKNKH NTELWSSLQD DFDTLEFVDC FNSIGIQYNS LLPVRVKTKP CIGILKKRAT 480
  481 TTPAILKEKT KTKVKKTKVL EPKPVTADPV PTVEIPKENN VPEAKEDQFL DLDDDDGIVA 540
  541 TVEETSIELN ANIDPEVDAP DAPTKEINFL ELRNLALGQA SRTSRAATKL KIRQIIEQHY 600
  601 RAKGKDIEND SSETIPKTTG ATGGRPGIRQ SVKSIIKQEK IKEMIEQIAT MDLTRICDLE 660
  661 KTSTKDCLKQ VIDKIDDENT KTK