YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638291, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLLTMFEE ADPFSTWWPT IAALAVGLVI TVRTIMSGQR CPNDNQIKEQ IVVVTGGNSG  60
   61 IGYEIAQALA GRGGRIILAC RNMKAAERAA AVIKRELGCR TPSYPDDDTN PADRYFVEAR 120
  121 YLDLNSFRSV HHFAGQLMAE FDRVDVLVNN AGLVFANTQL ATPDGFEQHS QVNYLAPFLL 180
  181 TQLLLPHLKR SEQGRIVFVS AHAHQSAKID FDDPLNVGTW AVKFHARDAF AHSKLAVLLA 240
  241 TRWLARELRD TSVTVNCCTP GLVRGTRHFR NSPLMSSICV RVVTFPWMWI FMKNPYEGAQ 300
  301 CAIRLATDPQ LKQVTGEYFN DCEIAASSEP GQDKELAKKL YMQTIKTLES VTKLTVDREA 360
  361 YAVKLEQEPE LRLETAPETE TNQAED

Type	Start	End	Confidence
Cytoplasmic	1	13	0.68
Transmembrane Helix	14	36	0.82
Non-Cytoplasmic	37	386	0.77