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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54638282, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDMFRSEEM ALCQMFIQPE AAYTSVSELG ETGCVQFRDL NINVNAFQRK FVTEVRRCDE  60
   61 LERKIRYIET EIKKDGIVLP DIQDDIPRAP NPREIIDLEA HLEKTESEMI ELAQNEVNMK 120
  121 SNYLELTELR KVLENTQGFF SDQEVLNLDS SNRGAGGDEA TAQHRGRLGF VAGVINRERV 180
  181 FGFERMLWRI SRGNVFLKRS DLDEPLNDPA TGHPIYKTVF VAFFQGEQLK NRIKKVCTGF 240
  241 HASLYPCPSS HNEREEMVKN VRTRLEDLKL VLSQTEDHRS RVLATVSKNL PSWSIMVKKM 300
  301 KAIYHTLNLF NMDVTKKCLI GECWVPTKDL PVVQKALSDG SAAVGSTIPS FLNVIDTNEQ 360
  361 PPTFNRTNKF TRGFQNLIDA YGVASYRECN PALYTCITFP FLFAVMFGDL GHGLILVLFG 420
  421 AWMVLCERKL ARIRNGGEIW NIFFGGRYII LLMGLFAVYT GIVYNDVFSK SMNLFGSRWV 480
  481 NNYNRSTVLT NPSLQLPPNS SAVGVYPFGL DPVWQLADNK IIFLNSFKMK LSIIFGVLHM 540
  541 VFGVSMSVVN FTHFKRYASI FLEFVPQILF LLLLFGYMVF MMFFKWVTYD SHTDFQPHTP 600
  601 GCAPSVLIMF INMMLFKNTP PPKGCKEFMF ESQPDVQKTF VIMGLICIPW MLLGKPLYIK 660
  661 FTRKSNAHSK HNGQLTGNME VAEGETPLPT GFSGNEESGG GGNSHDDEPM SEIYIHQAIH 720
  721 TIEYVLSTIS HTASYLRLWA LSLAHAQLSE VLWNMVLSLG LKMSGVGGII GLYIIFGAWC 780
  781 LFTLAILVLM EGLSAFLHTL RLHWVEFMSK FYEGLGYAFQ PFSFKAILDG EEEE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle