YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638277\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKFQRRSS PQAPGGLGVG ASSVSSTPSN QPRKRVKRCC RNFVTFMCTQ VGVGALIVLY  60
   61 AICGAFAFMN IEREYVDKTA AHVLELRQNC SQLLWYITEE HNLIDKRMWV NETNAVLREY 120
  121 QAQIAGIIKN GYVGRSPEQI WSFPAALMFC LSVITMIGYG NMVPRTPWGK GFTVIYATFG 180
  181 IPLYILYFLN MGRVLARSFK FLYRSMHDCT QERNFDTRLD ALENGSLGAL TLRKKIIVPS 240
  241 TACLWVIIFY VLTGTIMFAN WEKWSFLNSF YFCMTSLCKI GFGDFVPGAS LTTAADVDAA 300
  301 THKLQEDIAA DPNELSELQS IADQHSKLAI NFVYMLLGMG LVAMCRNLMR EEVHVKLKEM 360
  361 KEDAKLCVED TRLRFVGCCG DPRDVYENDY Y

Type	Start	End	Confidence
Cytoplasmic	1	42	0.64
Transmembrane Helix	43	68	0.74
Non-Cytoplasmic	69	139	0.55
Transmembrane Helix	140	163	0.86
Cytoplasmic	164	171	0.41
Transmembrane Helix	172	191	0.89
Non-Cytoplasmic	192	235	0.47
Transmembrane Helix	236	259	0.86
Cytoplasmic	260	265	0.40
Transmembrane Helix	266	283	0.43
Non-Cytoplasmic	284	327	0.90
Transmembrane Helix	328	348	0.87
Cytoplasmic	349	391	0.93