YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125774407, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	78	0.99
Transmembrane Helix	79	102	0.86
Non-Cytoplasmic	103	122	0.90
Transmembrane Helix	123	144	0.91
Cytoplasmic	145	151	0.78
Transmembrane Helix	152	171	0.95
Non-Cytoplasmic	172	178	0.79
Transmembrane Helix	179	201	0.89
Cytoplasmic	202	211	0.71
Transmembrane Helix	212	231	0.90
Non-Cytoplasmic	232	241	0.76
Transmembrane Helix	242	264	0.89
Cytoplasmic	265	297	0.98
Transmembrane Helix	298	319	0.91
Non-Cytoplasmic	320	331	0.93
Transmembrane Helix	332	353	0.89
Cytoplasmic	354	361	0.86
Transmembrane Helix	362	382	0.89
Non-Cytoplasmic	383	387	0.68
Transmembrane Helix	388	411	0.85
Cytoplasmic	412	421	0.74
Transmembrane Helix	422	442	0.90
Non-Cytoplasmic	443	450	0.76
Transmembrane Helix	451	472	0.89
Cytoplasmic	473	543	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENEPLNET QKQVNGRILP SNGHISPASS NGQVHANGRS LVKTPSLANG NGAANGTHIE  60
   61 APCCRDIHGK EPPDGGARAW LVMVSAFLCN GIIFGFINTY GVLHSLLSDR LTALGDPEAS 120
  121 SKAALVGSLA IGTTFLFSTV AGCLTDKIGL RLTTFAGGVL SAGGLLLSSF FTENISALYF 180
  181 SYGIMFGLGA ALAYTPTLAI LGHYFKRYLG KVSGFVTAGS SVFTVILPPC LDSLLGGYGL 240
  241 EATLRIMSLM SAFIIVCSFV YKPLHPPPDP PKKKPGRSRI NLFLRSIVNV EIWKRKRFVI 300
  301 WALCVPLALF GYFVPYVHMM QFVKTTFPGE DVNLPVMCIG ITSGIGRLIF GIIADMPGVN 360
  361 RMYLQQLSLV SIGVVTLLLP LTNSYVVLVS FTLVMGLFDG CFISLLGPIA YEICGPSGAT 420
  421 QAIGFLLGLS SIPLTVGPPV AGMIFDGTGS YTVPFVLAGL PPLVGSSLLF LIKCVKDDNN 480
  481 AASPLRAVAL PNGDIEIASN GNHVSGGTKS SAPLMGAAAT NGVNGVSPTA LSNGHGHVDN 540
  541 GTG