YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638166, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTEKFLRLQ SFYFRLLGLE LLDQQEVQSV GDIRRSICCI LAVATFLPLT IAFGLNNIHN  60
   61 MDKLTDTLCS VLVDLLALCK IGIFLGLYKD FRRLIQRFHD MLERECHWEV AAKIVARQND 120
  121 RDQFISSLYT ICFLVAGGSA CLMSPLHMII RFWRTAEMEP DYPFPSVYPW DNRRFHNYLL 180
  181 SYLWNVFAAF GVALATICVD TLFSSLTHNL CGLFEICRHK MLTFKRRRPV ETQQNLRHIF 240
  241 QLYGECLELG SSLNGFFRQI VFAQFIAASL HLCVLCYQLS SNLMQPGMLF YAAFMAAILG 300
  301 QVAIYCHGGA CVQAESQLFA QAIYESDWLP LLLGGRLDVG RSLQIGMVRA QRGCRLDGYF 360
  361 FEANRKTFDL IVRTAMSYVA LLRS

Type	Start	End	Confidence
Cytoplasmic	1	36	0.95
Transmembrane Helix	37	55	0.94
Non-Cytoplasmic	56	66	0.75
Transmembrane Helix	67	88	0.84
Cytoplasmic	89	126	0.87
Transmembrane Helix	127	149	0.89
Non-Cytoplasmic	150	181	0.83
Transmembrane Helix	182	204	0.82
Cytoplasmic	205	259	0.80
Transmembrane Helix	260	281	0.87
Non-Cytoplasmic	282	287	0.76
Transmembrane Helix	288	309	0.91
Cytoplasmic	310	384	0.83