YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638140, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSACLFVRYD VVRATDTDQP NFAPRHVGMT PNIIGSTFIL AETAIADGNN NKMAAAPASS  60
   61 ATTPKAVKQA PAKKSEPVAE TEKKPFQMEI VWRNVGLFIV LHSMALYGLY LVFAESAYME 120
  121 LLPVYATMFL GGLGITAGVH RLWSHKAYKA KLPLRIFLML CQSLAFQNSI WEWTRDHRVH 180
  181 HKFTDTHADP HNSRRGFFFA HMGWLMCKKH PDVTSKGKQI SMADIEEDPV VIFQKKFYFV 240
  241 VMPICCFVVP MIFPYYFMGS SLRVCFFTCS MLRFCLSLHF TWLVNSAAHF YGMKAYDVNV 300
  301 SARNNKLVST LTIGEGWHNY HHVFPWDYKA AELGTYSFNW TTAFIDVMAK IGQAYDLKFV 360
  361 SQEMVYKRAL RTGDGSHIAA LMDANNNNAI PTSELVAHLD HEKEEHAIWG WDDNDISEED 420
  421 RKSASVVNKE SDCKRD

Type	Start	End	Confidence
Cytoplasmic	1	90	0.98
Transmembrane Helix	91	114	0.88
Non-Cytoplasmic	115	120	0.92
Transmembrane Helix	121	143	0.91
Cytoplasmic	144	236	0.68
Transmembrane Helix	237	258	0.90
Non-Cytoplasmic	259	263	0.57
Transmembrane Helix	264	284	0.71
Cytoplasmic	285	436	0.63