YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638085\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTSKFVSE FCDIIDSYGG RDKVMKALCY SAKLVAGYHA KRNPDLAKRY ATASSKISGA  60
   61 RATLRLIDDI PMIQYALEYG LGENEPDRVM AVLGVTANIV DLLYYPIEKV CWLAEHKIVD 120
  121 VKNADRWDNV NSIFWVLSVY LNLMRTMRNF SLNQEKLSCN PKLSDIDATV LAKHRLELVS 180
  181 IARISLDFVH AVSTLPGGYL WGGKLTTFQV GAIGTLSAGL GIYQIFAKRR LNK

Type	Start	End	Confidence
Cytoplasmic	1	178	0.89
Transmembrane Helix	179	200	0.74
Non-Cytoplasmic	201	206	0.74
Transmembrane Helix	207	227	0.90
Cytoplasmic	228	233	0.92