YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638054, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLLAAARPYL QIFSVFALTP PPNFFDRTTN RRLRRFLIVG YGVYSLFLLG ILICMSYVNV  60
   61 LALNAEIEQF QLEDFTRAMG RVQKVVLASM GIVIHLNMFL NYRRLGHIYE DIADLEMEID 120
  121 DASQCFGGQP GHNSFRYRLA TNCGLWLVAL VGLMPRFTIE AMGPFVSWPS KILSELVLIM 180
  181 LQLKCLEYCV FVVMVYGLVL RLRHTLRQLQ VELADCNQRD MLQALCVALR RNQQLLGRVW 240
  241 RLVGELEKYF TLPMMFLFLF NGLTILHVVN WAYINQFNPA DCCRYVRLGN CVLLLINPLV 300
  301 ACYLSQRCVN AYNSFPRILH QIRCLSVANN FPILSMGLRE YCLQLQHLRL LFTCGGFFDI 360
  361 NLKNFGGLIV TILGYTIILV QFKFQAVAEE K

Type	Start	End	Confidence
Cytoplasmic	1	36	0.92
Transmembrane Helix	37	61	0.88
Non-Cytoplasmic	62	79	0.93
Transmembrane Helix	80	100	0.88
Cytoplasmic	101	138	0.95
Transmembrane Helix	139	159	0.89
Non-Cytoplasmic	160	177	0.86
Transmembrane Helix	178	200	0.90
Cytoplasmic	201	248	0.96
Transmembrane Helix	249	269	0.92
Non-Cytoplasmic	270	364	0.73
Transmembrane Helix	365	384	0.82
Cytoplasmic	385	391	0.74