YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638051, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLMSGELDS CSLRRMHRVM KCLGIIPFIP IQHFYLKVLC NLFMVFVIGT ASSWRFSFNY  60
   61 EFTYDFLNDH MSRILDLTNF LVLMSAHFTI VMEILWGNRS AEIEQQMEQI LHDLRVHLGR 120
  121 EVSLKRFRHY SNAIYGSLIS RFLLLFAVAV YNNEGLVFSA MYSEAVMQLR FTEFSLYCGV 180
  181 ALAFHQELCS AGSSLLVELH LTRFDLWPLR RFTLEKLSRL QQIHGRLWQT IRLIERNFQR 240
  241 SLSIMLLKFF VDTAALPYWL YLSKIQHTSV SVQYYCATEE FCKLMEIIVP CWLCSRCDLM 300
  301 QRKFRSIFYR LATGRRNGQL NAALIRICIQ LRQEKYQFSA GGFAYISTEM LGTFLFGMIS 360
  361 YIVIGIQFNL NFNASNSSKL AAEAAVTDAP I

Type	Start	End	Confidence
Cytoplasmic	1	32	0.84
Transmembrane Helix	33	54	0.78
Non-Cytoplasmic	55	73	0.85
Transmembrane Helix	74	97	0.83
Cytoplasmic	98	132	0.89
Transmembrane Helix	133	151	0.85
Non-Cytoplasmic	152	180	0.73
Transmembrane Helix	181	201	0.66
Cytoplasmic	202	341	0.59
Transmembrane Helix	342	368	0.73
Non-Cytoplasmic	369	391	0.53