YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125773785, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFERLREVRL SGLSAYILRF SYHYARVLGV ICFEVSKKGP KDALVGRKNF RLKWYSLILR  60
   61 LVCFAVVCCF CAPFVMTIED PNERTLQCMR LVSCLVCTAC ILVLQIFHEH EVLRMINSFL 120
  121 RVFRRVRQMS TRRKYGFGGK REFVLLLFKA ICLTYELFCE LHQILFASSL VVTLIALCDI 180
  181 IVEIGSLMII HIGFAGFLSV AALYSEVNGY VRIELRRQLR SLERPGGAPA SRRQMRTASC 240
  241 RLEECVAVYD EIERVGRSFH ILLQLPVLII LVAKIFATTV LSYEVIIRVD RYPCQAGIWG 300
  301 LVLKSFADVI LLTLAVHEAV SSSKVIRRLS LENFPVSDQK EWHVKLEMFL SRLNFNEFRV 360
  361 CPLGLFEVSN EIILVFLSSM ITYFTYVMQY GIQTHRL

Type	Start	End	Confidence
Cytoplasmic	1	56	0.94
Transmembrane Helix	57	78	0.95
Non-Cytoplasmic	79	85	0.94
Transmembrane Helix	86	107	0.92
Cytoplasmic	108	160	0.85
Transmembrane Helix	161	182	0.73
Non-Cytoplasmic	183	186	0.63
Transmembrane Helix	187	210	0.79
Cytoplasmic	211	260	0.86
Transmembrane Helix	261	283	0.79
Non-Cytoplasmic	284	297	0.71
Transmembrane Helix	298	320	0.65
Cytoplasmic	321	371	0.65
Transmembrane Helix	372	390	0.70
Non-Cytoplasmic	391	397	0.55