YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125773697, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHKERIES MHLILQVMRL FGLWPWSLSE GDHWTVWGFV RRNYRFLLHL PITFTFIGLM  60
   61 WLEAFVSSNL EQAGQVLYMS ITEMALVVKI LSIWHHRSAA WQLMHDFQQA PELRLRSQEE 120
  121 QSFWQREQRY FKWFFYIYIL ISLGVVYSGC TGVLFLKEYE LPFAYYVPFE WHNERGYWFA 180
  181 YGYDMAGMTL TCISNITLDT LGCYFLFHIS LLYRLLGMRL RALKSTADET YFGQELRQIF 240
  241 EMHQSVRRLT HTCQAIVSPY ILSQIILSAL IICFSGYRLQ HVGIRANPGQ FIAMLQFVSV 300
  301 MILQIYLPCY YGNEITVYAH QLTNEVYHTN WLHCRPPLRK LLNGYMEHLK KPVAIRAGNF 360
  361 FAVGLPIFVK TINNAYSFLA LLLNVS

Type	Start	End	Confidence
Cytoplasmic	1	45	0.77
Transmembrane Helix	46	65	0.94
Non-Cytoplasmic	66	73	0.71
Transmembrane Helix	74	93	0.82
Cytoplasmic	94	133	0.94
Transmembrane Helix	134	156	0.95
Non-Cytoplasmic	157	185	0.94
Transmembrane Helix	186	212	0.83
Cytoplasmic	213	255	0.92
Transmembrane Helix	256	277	0.85
Non-Cytoplasmic	278	290	0.75
Transmembrane Helix	291	310	0.86
Cytoplasmic	311	357	0.88
Transmembrane Helix	358	376	0.60
Non-Cytoplasmic	377	386	0.54