YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125773695\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTDRIAAV RFLITVQRWT GLLKWQDENS HDLWTWVKHI YPFALHLPLT FTYIGLMWLE  60
   61 ALTSADFEQA GQVLYMSVTE LALITKLINI WYRREQVAGF IHELDGDPAY ELGNPEEREF 120
  121 WHRQQMHFQR IFYFYIRGSL FVAAMGFSSV FFQEEYELPF GYYVPFEWRT PERYYYAWGY 180
  181 NVIAMTLCCL SNILLDTMGC YFMFQIALLY RVMNLRLQAL HRTPERESAP RLRAIFRLHT 240
  241 RVRRLTRQCE ALVSPYVLSQ VVFSAFIICF SAYRLVHMGF RERPGLFLTT LQFVAVMIVQ 300
  301 IFLPCYYGNE LTFHASALTD SVFRTNWLEY SVPTRKLLNC YMEFLKRPVK VRAGVFFEIG 360
  361 LPIFVKTINN AYSFFALLLK VSK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.80
Transmembrane Helix	40	62	0.73
Non-Cytoplasmic	63	70	0.59
Transmembrane Helix	71	90	0.64
Cytoplasmic	91	132	0.94
Transmembrane Helix	133	152	0.97
Non-Cytoplasmic	153	181	0.86
Transmembrane Helix	182	204	0.84
Cytoplasmic	205	251	0.90
Transmembrane Helix	252	276	0.82
Non-Cytoplasmic	277	285	0.80
Transmembrane Helix	286	307	0.89
Cytoplasmic	308	383	0.76