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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125773671, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYLTILLCN RKPTMLSRRS KEKSQAHKEG VVGKYVKKDT PPVIPVINVW TSDQRSKKKT  60
   61 LQRCASTSPS CEFKPRSSST SRNTYSCNDA QPDYYHARRA QSQLPLNPHT HANHPPLPPL 120
  121 QYRASSNQLQ LSQGNSSNYV NIEQIERMRR QQSSPLLQTP TSGFQRSYST TPKHSHPHMA 180
  181 AASFDADQGL LSASYANMLQ LPRRPHSPAH YALQQQQQQQ QQSQLQLHQQ HASTPYGSTL 240
  241 RFDPAAMSIR DRQPRYQPTR SPLQQQQQLQ HQQLAAHLAG SYSSDSYPIY ENPYRVSSMR 300
  301 VTQSQRSESP IYSNTTASSA TLAVVPPHHH LTVPSSGGSL SGSGRGGSSG SIRGASTSVQ 360
  361 SLYAPPPTPP AAGVTPTGGA AAGSVNGSLQ KVPSQQSLTE PEELPLPPGW ATQYTLHGRK 420
  421 YYIDHNAHTT HWNHPLEREG LPVGWRRVVS KLHGTYYENQ YTGQCQRQHP CLTSYYVYTT 480
  481 SAEPPKAIMP EASMYAPPAH THNALVPANP YLLEEIPKWL AVYSEADSSK DHLLQFNMFS 540
  541 LPELEGFDSM LVRLFKQELG TIVGYYERYR DCMGSIYTYW PGRGPAQSLD SRTSFGIASV 600
  601 RRSFASSSSS SAQPNCQLNT LFNFCFNVVA LGNGQTSRGL TVDSHDITVL LNTNESFIVF 660
  661 AKWVFIETES FLIKFNSNSP FREDLTEPVS VRLLKEHDDH LSLDPESFTY PAGATGNQTV 720
  721 VITGLRAGYV AVTAVDGSNE LIEDVYLRVT VAVSKGLIYT SIVFGWVYFV AWSVSFYPQI 780
  781 WINFRRKSVE GLNFDFVILN IVGFTLYSMF NCGLYFFDTM QDEYESRHPR GLNPVMLNDV 840
  841 VFSLHAMFAT IITIVQCCIY EVTMRWRYIT SVIHWLDFLY YCSYVKLAIT IIKYVPQALM 900
  901 NYRRKSTAGW SIGNILLDFT GGTLSMLQMI LNGFNYDDWA SIFGDPTKFG LGLFSVLFDV 960
  961 FFMLQHYVFY RNACGVARTS SQTLIKFVQD NDGFFTNGSQ LISSSTVSQA TYTWTPVLEV1020
 1021 AAVAQQYEES VITGGGQNMN NNVVFYNQSG HMVNTMADVY ASSNINYGGL AHVPQTIQTY1080
 1081 SVAAANDIQD EYFHNGGYNI NNSGVTFNQN GQNASRTSDV FGSGIISSGG VPHVPVLPAA1140
 1141 YFSNGGQQVI NGGNLAANCV NLNNNVMQQN TCSLTIPATV EGTGAPIAVS VNGKSLTYVG1200
 1201 QNRAAVAVYK REDAVNGLHA ANADSSVGSA ASTVEDGAIN EESDEPTDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle