YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125773565\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPNAHAGAQ SITDSLIAAA NAAADSDQSL TKLQQDSTGV LFECDVETTD GGLVKDILPM  60
   61 KKADKRKMKL VWRNIIAFGY LHLAALYGAY LMITSAKWET IGLAYILYAV SGLGITAGAH 120
  121 RLWAHRSYKA KWPLRLILAT FNTIAFQDAA YHWARDHRVH HKYSETDADP HNATRGFFFS 180
  181 HIGWLLCKKH PEVKAKGKGV DLSDLRKDSI LMFQKKYYMI LMPLACFILP TMIPMYFWNE 240
  241 TFVNAWFVAT MFRWCFILNV TWLVNSAAHK FGGRPYDKEI SPSQNISVAV LAFGEGWHNY 300
  301 HHVFPWDYKT AEFGKYSLNF TTAFIDFFAK IGWAYDLKTV SPEIIKKRVK RTGDGTHATW 360
  361 GWGDTDQPKE EIDDALIIHK KSE

Type	Start	End	Confidence
Cytoplasmic	1	69	0.99
Transmembrane Helix	70	93	0.90
Non-Cytoplasmic	94	100	0.90
Transmembrane Helix	101	124	0.90
Cytoplasmic	125	216	0.94
Transmembrane Helix	217	238	0.92
Non-Cytoplasmic	239	244	0.84
Transmembrane Helix	245	264	0.92
Cytoplasmic	265	383	0.91