YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125773549, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFENTFFR GPSPSYSDDA NSENALSLTL PIGAAAEEND FCHDDSKTDP VDYFDEKFDS  60
   61 DSCSRLHPGQ HGRNSFAFWT VVIILLALTV GNLILTLTIV GVLRLGKGVH GMELIPEVDV 120
  121 VKFYGSTELE RLQTNSIGQV HGFTDVPVTI SSDVSSDDNP DAGVHVRVFR NGNGASSERD 180
  181 RIVVDKDAIV IDATNVFDVK DPADRQSIFS THRPQYNIPA GVAALQAKVV SASGISSPID 240
  241 VPLNMESDGR IVVKGSEGVF FDAASIDLQA EHHVSINSTQ GATVLEAGTG IFLDMDRIPI 300
  301 VSSELGIRTG SVQYKICVCM PQGTLFRIAI PRIHNGPKIS CAHFSSQDDP CEVN

Type	Start	End	Confidence
Cytoplasmic	1	75	0.75
Transmembrane Helix	76	99	0.88
Non-Cytoplasmic	100	354	0.77