YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125773499, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFTNKNQR NAKLLRCAAL GMTLLFFGSL ILVSDPVQSI LDVQLNLKPG SLLYLLWLDP  60
   61 PIDVYINVYM FNYTNVDAFT DGIDTKLKLD EVGPYVYKEV LTNHNITLNE ANNTISYSPR 120
  121 REYIFVPERS VGDPKVDHIR APNIPLMGVT TLASSLSVFA SLGLSAVAKR LNAQPMLEMS 180
  181 VHEYMWGYED HLVELAAKFV PSWIDFASFG IMEKLFREGN ESNVVNMNLP ELKDKYGVKL 240
  241 PGSPRGYTLD SINGERGFTR WEYDEQTNGT MCNRIWGSHD ATLFPRDINE KDAFYLYRRT 300
  301 FCRKLPLKFN STRTYNGIDG YEFVMEPNVF DSELGNPNSS CFCKNNRCLK KGVGSVSPCY 360
  361 YNIPLAITYP HFMHGDPSLL EPFDGLQPDE SRFSSVFVVQ PQLGAPMQGT HLRLQANQVV 420
  421 GKVNFNSLME PFEDMVLPLL WVDLNIDVLS FSLRMLIHGI KWGFHLLQWT AALGMLLAGV 480
  481 YQLCSALMVC FWPSVHQQQF LKVEQAEKGG RPGSLTLAVA TLRQSSVVAS LQMAQEQEEQ 540
  541 HLLSSGSSIK PNLPDA

Type	Start	End	Confidence
Signal Peptide	1	39	0.73
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	436	0.79
Transmembrane Helix	437	457	0.55
Cytoplasmic	458	468	0.49
Transmembrane Helix	469	492	0.81
Non-Cytoplasmic	493	556	0.67