YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54637660, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.49
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLVSAKTC LKFLQVMPQA VSSGGLGVLA PALQMQQVRH RQTKHWKPEF KKLRRQKFVK  60
   61 IELPNFREKP EDISKEEMRS RMKERGVLPP RPWMERPFHI SCTGGIFEAY VPPEGDGKKS 120
  121 IISSSGAKQK LEFLEKKSKS LIAVRKIRSY DESFSSDQFG AEAQEIYVAA HTLMAAKEKY 180
  181 KIREYVSERC YPEMMHNVKD KTIHWRFLQS LEPPRVVHAR CTEVITKENQ FAQVTVRFHT 240
  241 QQMLAIYDRF GRLMHGSEIL TKDVLEYVVF EKHISNEYGK WRLHDKIIPD WLPAKQPSPI 300
  301 TYRLIEDVEE EPPKELSAGE EPKPLEAGSE QPKEQLQLDT PPERSSKPTL AL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.43
Transmembrane Helix	13	33	0.46
Non-Cytoplasmic	34	352	0.99