YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54637610\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.95
Transmembrane Helix	100	121	0.80
Non-Cytoplasmic	122	126	0.57
Transmembrane Helix	127	147	0.83
Cytoplasmic	148	175	0.55
Transmembrane Helix	176	198	0.89
Non-Cytoplasmic	199	248	0.44
Transmembrane Helix	249	267	0.64
Cytoplasmic	268	293	0.80
Transmembrane Helix	294	316	0.87
Non-Cytoplasmic	317	361	0.81
Transmembrane Helix	362	383	0.74
Cytoplasmic	384	435	0.72
Transmembrane Helix	436	458	0.84
Non-Cytoplasmic	459	462	0.61
Transmembrane Helix	463	481	0.90
Cytoplasmic	482	494	0.72
Transmembrane Helix	495	526	0.76
Non-Cytoplasmic	527	655	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNPASDHV YLNDGFKCST ISIHTNLSEQ NGGSNNSVGS QGSKEFILTE DGKKVKPSRS  60
   61 TVECTKSWLQ ECSRRTFNRK TLHKKLPILG WLPRYSSQDA VGDLVAGITV GLTVIPQALA 120
  121 YAGIAGLPVA YGLYASFLGC FVYIFLGSCK DVPMGPSAIV ALLTFQVAQG SWQKSVLLCL 180
  181 LSGIVELLMG LFGLGFLIDF VSGPVSSGFT SAVSLIILTS QIQSVLGITA KGNTFVEIWT 240
  241 QVFHNIEHTR AGDTVLGLTC IVVLLLMRSL SSCRIGPDDE EQCSSLQRVV NKVLWIVGTA 300
  301 RNAILVVVCC LMGYLLHSEE HGAPFRVVGD IPPGLPSVQW PPTSLSANET SHGAAENFVE 360
  361 MVHSMGSGLI VIPLISLMEN IAICKAFANG KSVDASQELI AIGTANIFNS FVQGFPGTGA 420
  421 LSRGAVNNAS GVRTPLSNIY SGGLVMIALL FLTPYFYFIP RPTLAAIIIA AVVFMIEVKV 480
  481 VKPMWRSKKS DLVPGVGTFV ACLVLPLEWG ILIGVGLNVI FILYHAARPK LSTELLTTQS 540
  541 GMDYMMITPD RCLIFPSVDY VRNLVNKQSM RQNVPVVIDA SHVYGADFTT ATVIDSLISD 600
  601 FNQRGQLLFF YNLKPSICAI FEQVSAAQFV VYYQEQQLDD LLKERNYTQK RSETA