YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54637593, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSSNLLER KKSVSDLSAE VEETSTATTG LDSSGHSSAG AGTTATTTAT QHGSDETEED  60
   61 IFEQVQMILR KRRGWGPDDS LSNDLHLLEY DDELGEEDDA GCPLPSTPED TQLIEAEMTE 120
  121 VLKAGVLSDE IDLGALAHNA AEQAEEFVRK VWEASWKVCH YKNLPKWLQD NDFLHRGHRP 180
  181 PLPSFRACFK SIFRIHTETG NIWTHLLGFI AFLGVAVYFI TRPSVEIQTQ EKIVFGAFFI 240
  241 GAIVCLGFSF TFHTLSCHSV EMGRLFSKLD YCGIALLIMG SFVPWLYYGF YCHYQPKVIY 300
  301 LSVVCVLGVL SIIVSLWDKF SEPALRPLRA GVFMSFGLSG VIPAIHYSIM EGWFSQMSRA 360
  361 SLGWLILMGL LYIIGALLYA LRVPERWFPG KFDIWGQSHQ IFHILVIAAA FVHYHGISEM 420
  421 AMYRVMYSEC TVPIEPITF

Type	Start	End	Confidence
Cytoplasmic	1	200	0.92
Transmembrane Helix	201	221	0.94
Non-Cytoplasmic	222	232	0.85
Transmembrane Helix	233	255	0.91
Cytoplasmic	256	268	0.79
Transmembrane Helix	269	289	0.92
Non-Cytoplasmic	290	297	0.77
Transmembrane Helix	298	317	0.97
Cytoplasmic	318	327	0.79
Transmembrane Helix	328	350	0.88
Non-Cytoplasmic	351	359	0.86
Transmembrane Helix	360	381	0.93
Cytoplasmic	382	398	0.82
Transmembrane Helix	399	417	0.91
Non-Cytoplasmic	418	439	0.87